EM-SNP: A Program for Allele Frequency Estimation, SNP Detection and Association Studies Based on Pooled Sequencing Data Using EM Algorithms


Details:

 

This R package is intended to implement a program for allele frequency estimation, SNP detection and association studies based on pooled sequencing data using EM algorithms. The details of the methodology as well as the correct citation for this program are as follows:

 

Quan Chen and Sun FZ (2013):  A unified approach for allele frequency estimation, SNP detection and association studies on pooled sequencing data using EM algorithms. BMC Genomics (APBC2013).

Code and Executables:

Source code and readme files

EM-SNP

 

Please contact us if there are any bugs within our program. 
Copyright © 2012 The University of Southern California. All RIGHTS RESERVED.


Created Date: October 07, 2012
Last Updated Date: October 07, 2012
Contact

 Fengzhu Sun, Ph.D.
 Molecular and Computational Biology Program
 Department of Biological Sciences
 University of Southern California
 Los Angeles, CA, 90089
 (213) 740-2413 (phone)
 (213) 740-2424 (fax)
 Email: fsun AT usc DOT edu