Network RNAi Phenotype (NePhe) Score

Details:

This R package is intended to implement a network-based integrative approach to prioritize reliable hits in genome-wide screens. The details of the methodology as well as the correct citation for this program are as follows: Li Wang, Zhidong Tu, and Fengzhu Sun. (submitted) The usage of each function in the package has been documented in the help file.

Code and Executables:

Source Code: 

NePhe

Pre-compiled executables: 

Sample input file:

  • testPPI.txt - contains PPI information of a sample network.
  • testhits.txt - contains hit information from a sample RNAi screen.

Please contact us if there are any bugs within our program. 
Copyright © 2009 The University of Southern California. All RIGHTS RESERVED.

Created Date: October 2006
Last Updated Date: October 31, 2006
Contact

 Fengzhu Sun, Ph.D.
 Molecular and Computational Biology Program
 Department of Biological Sciences
 University of Southern California
 Los Angeles, CA, 90089
 (213) 740-2413 (phone)
 (213) 740-2424 (fax)
 Email: fsun AT usc DOT edu