An integrative approach for causal gene identification and gene regulatory pathway inference

Details:

This program is to implement an algorithm to infer the causal gene for the expression variation and the underlying regulatory pathway. The details of the methodology as well as the correct citation for this program are as follows: Zhidong Tu, Li Wang, Michelle N. Arbeitman, Ting Chen, and Fengzhu Sun. Bioinformatics 22 (2006) pp. e489-e496. This program is written in java and can be compiled using Sun JDK (later than 1.4) . Furthermore, each step of the program is well documented.

Code download:

Total Package: 

After downloading the package, unzip it and copy all files into the same file folder.

Document download:

Document: 

After downloading the package, unzip it to see the supplementary documents, additional files and descriptions for the files.


Please contact us if there are any bugs within our program. 
Copyright © 2006 The University of Southern California. All RIGHTS RESERVED.

Created Date: Oct 2006
Last Updated Date: Oct 17, 2006
Contact

 Fengzhu Sun, Ph.D.
 Molecular and Computational Biology Program
 Department of Biological Sciences
 University of Southern California
 Los Angeles, CA, 90089
 (213) 740-2413 (phone)
 (213) 740-2424 (fax)
 Email: fsun AT usc DOT edu