Programs

1. MSRV – Sequence-based Prioritization of Nonsynonymous Single Nucleotide Polymorphisms

2. HapBlock - The Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNPs Selection by Haplotype Data and Genotype Data.

3. MitoDis - A Novel Class of Tests for the Detection of Mitochondrial DNA mutation Involvement in Diseases

4. MLE-Rel: A Maximum Likelihood Estimation (MLE) Based-algorithm for Estimating the Reliability of Observed Protein Interactions Combining Gene Expression Profiles and Localization

5. Domain-Int: An Integrated Approach for Predicting Domain Interactions

6. KLR-Fun: A Kernel Logistic Regression (KLR) Based Approach for Protein Function Prediction

7. Int-Path: An Integrative Approach for Causal Gene Inference and Pathway Identification

8. EM-NM: An Expectation-Maximization (EM) Algorithm for Network Motif Identification

9. CGI: Prioritizing Genes by Combining Gene Expression and Protein-Protein Interaction Data

10. LocSim: Local Similarity Analysis for Microbial Community Profiles

11. DynBin: A Dynamic Programming Algorithm for Binning Microbial Community Profiles

12. Sub-GSE: A Program for Gene Set Enrichment Analysis by Testing Subsets of Genes

13. NePhe: Network RNAi Phenotype (NePhe) Score

14. Motif_Power: A Program for calculating The Power of Detecting Enriched Patterns: An HMM Approach

15. D2, D2*, and D2S: Alignment free sequence comparison (I): statistics and power

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