Programs

MSRV – Sequence-based Prioritization of Nonsynonymous Single Nucleotide Polymorphisms

HapBlock - The Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNPs Selection by Haplotype Data and Genotype Data.

MitoDis - A Novel Class of Tests for the Detection of Mitochondrial DNA mutation Involvement in Diseases

MLE-Rel: A Maximum Likelihood Estimation (MLE) Based-algorithm for Estimating the Reliability of Observed Protein Interactions Combining Gene Expression Profiles and Localization

Domain-Int: An Integrated Approach for Predicting Domain Interactions

KLR-Fun: A Kernel Logistic Regression (KLR) Based Approach for Protein Function Prediction

Int-Path: An Integrative Approach for Causal Gene Inference and Pathway Identification

EM-NM: An Expectation-Maximization (EM) Algorithm for Network Motif Identification

CGI: Prioritizing Genes by Combining Gene Expression and Protein-Protein Interaction Data

LocSim: Local Similarity Analysis for Microbial Community Profiles

DynBin: A Dynamic Programming Algorithm for Binning Microbial Community Profiles

Sub-GSE: A Program for Gene Set Enrichment Analysis by Testing Subsets of Genes

NePhe: Network RNAi Phenotype (NePhe) Score

Motif_Power: A Program for calculating The Power of Detecting Enriched Patterns: An HMM Approach

D2, D2*, and D2S: Alignment free sequence comparison (I): statistics and power

D2, D2*, and D2S: Alignment free sequence comparison (II): theoretical power of comparison statistics

CEDER: Accurate detection of differentially expressed genes by combining significance of exons using RNA-Seq

RD: A Program for Statistical Estimation of Isoform Expression Levels using RNA-Seq Based on the Modeling of RNA Degradation

NGS-Motif-Power: Significance and Power of Pattern Occurrences in NGS reads

D2NGS: Alignment-Free Sequence Comparison Based on Next Generation Sequencing Reads

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