|
71. |
Peña-Castillo
et al. (2008) A critical assessment of Mus musculus gene function prediction using
integrated genomic evidence. Genome Biology 9(Suppl 1):S2 |
|
70. |
Pape UJ, Rahmann S, Sun FZ, Vingron M
(2008) Compound poisson approximation of the number of
occurrences of a Position Frequency Matrix (PFM)
on both strands. Journal of Computational Biology, in press |
|
69. |
Zhou LQ, Ma XT, Sun FZ (2008)
The effects of protein interactions, gene essentiality and regulatory regions on expression variation. BMC Systems Biology 2:54 |
|
68. |
Jiang R, Yang H, Zhou LQ, Kuo
CCJ, Sun FZ, Chen T (2007) Sequence-based
prioritization of nonsynonymous single nucleotide polymorphisms for the study
of disease mutations. Am J Hum Genet 81:346-360 |
|
67. |
Yang, Kim SK, et al.
(2007)
Evidence
of mitochondrial DNA involvement in hypertension and systolic blood pressure:
the Framingham heart study. Journal of
Hypertension 25(10):2067-2073 |
|
66. |
Ma XT, Lee HJ, Wang L, Sun FZ (2007) CGI: A new approach for
prioritizing genes by Combining Gene expression and protein-protein
Interaction data. Bioinformatics 23:215-221 |
|
65 |
Hu YQ, Zhou JY, Sun FZ, Fung WK (2007) The transmission
disequilibrium test and imprinting effects test based on case-parent pairs.
Genetic Epidemiology 31:273-287 |
|
64. |
Rui
Jiang, Zhidong Tu, Ting Chen, Fengzhu Sun (2006)
Network
motif identification in stochastic networks (Program). Proc Natl Acad Sci |
|
63. |
Jiang R, Yang H, Sun FZ,
Chen T (2006) Searching
for interpretable rules for disease mutations: A simulated annealing bump
hunting strategy. BMC Bioinformatics 7:417 |
|
62. |
Cheng C, Ma XT, Yan XT, Sun FZ, Li LM (2006) MART: a new method to
detect differential gene expression in treatment-control time courses.
Bioinformatics 22:2650-2657 |
|
61. |
Hyunju
Lee, Minghua Deng, Fengzhu Sun, Ting Chen (2006)
An integrated approach to the
prediction of domain-domain interactions. BMC Bioinformatics 7:269 |
|
60. |
Hyunju
Lee, Zhidong Tu , Minghua Deng, Fengzhu Sun, Ting
Chen (2006) Diffusion kernel based logistic
regression models for protein function prediction (Program). OMICS: A Journal of Integrative
Biology, 10:40-55 |
|
59. |
Quansong Ruan, Debojyoti Dutta, Michael
S. Schwalbach, Joshua A. Steele, Jed A. Fuhrman, and Fengzhu Sun (2006) Local similarity analysis
reveals unique associations among marine bacterioplankton species and
environmental factors (program). Bioinformatics
22:2532-2538 |
|
58. |
Quansong Ruan, Joshua A.
Steele, Michael S. Schwalbach, Jed A. Fuhrman, and Fengzhu Sun (2006) A
dynamic programming algorithm for binning microbial community profiles (program). Bioinformatics 22:1508-1514 |
|
57. |
Nicolas P, Sun FZ, Li LM (2006) A model-based approach to selection of tag SNPs. BMC Bioinformatics 7:303 |
|
56. |
Zhidong Tu, Li Wang, Michelle Arbeitman, Ting Chen & Fengzhu Sun (2006) An integrative approach for causal gene identification and gene regulatory pathway inference (Program). Bioinformatics (ISMB 2006) 22:e489-e496 |
|
55. |
Zhidong Tu, Li Wang, Min Xu, Xianghong Zhou, Ting Chen & Fengzhu Sun (2006) Further understanding human disease genes by comparing with housekeeping genes and other genes. BMC Genomics 7:31 |
|
54. |
Kui Zhang, Fengzhu Sun (2005) Assessing the power of tag SNPs in the mapping of quantitative trait loci (QTL) with extremal and random samples. BMC Genetics 6:51 |
|
53. |
Kui Zhang, Zhaohui Qin, Ting Chen, Jun S. Liu, Michael S. Waterman, Fengzhu Sun (2005) HapBlock: Haplotype block partitioning and Tag SNP selection software using a set of dynamic programming algorithms (Program). Bioinformatics 21:131-134 |
|
52. |
Kui Zhang, Fengzhu Sun, Hongyu Zhao (2005) HAPLORE: A program for haplotype reconstruction in general pedigrees without recombination. Bioinformatics 21:90-103 |
|
51. |
Fengzhu Sun, Ting Chen, Minghua
Deng, Hyunju Lee, Zhidong Tu (2005) Data integration for the study of protein
interactions. In Rudy Guerra and David Allison: Meta-analysis and Combining
Information in Genetics, Chapman and
Hall |
|
50. |
Faina Schwartz, Arvi Duka, Fengzhu Sun, Jing Cui, Athanasios Manolis and Haralambos Gavras (2004) Mitochondrial genome mutations in hypertensive individuals. Hypertension17:629-635 |
|
49. |
Schulze TG, Zhang K, Chen YS, Akula N, Sun FZ, McMahon FJ (2004) Defining haplotype blocks and tag SNPs in the human genome. Human Molecular Genetics 13 335-342 |
|
48. |
Zhang K, Qin ZHS, Liu JS, Chen T, Waterman MS, Sun FZ (2004) Haplotype block partitioning and tag SNP Selection using genotype data and their applications to association studies. Genome Research 14:908-916 |
|
47. |
Deng MH, Tu ZD, Sun FZ,
Chen T (2004) Mapping gene
ontology to proteins based on protein–protein interaction data. Bioinformatics
20:895-902 |
|
46. |
Deng MH, Chen T, Sun FZ
(2004) Integrated
probabilistic model for functional prediction of proteins, RECOMB2003.
Also on Journal of Computational Biology, 11:463-476 |
|
45. |
Li WT, Sun FZ, Grosse I
(2004) Extreme-value
distribution based gene selection criteria for discriminant microarray data
analysis using logistic regression. RECOMB2003. Also on Journal
of Computational Biology 11:215-226 |
|
44. |
Lai YL, Sun FZ (2004) Sampling
distribution for microsatellites amplified by PCR: mean field approximation
and its application to genotyping. J Theor Biol, 228:185-194 |
|
43. |
Lai YL, Sun FZ (2004) Understanding
the mutation mechanisms during polymerase chain reaction (extended abstract).
In M. Huebner and M. Sorensen (eds) Workshop on Dynamical
Stochastic Modeling in Biology, pages 59-68 |
|
42. |
Sung Kim, Kui Zhang, Fengzhu Sun (2003) Detecting susceptibility genes in case-control studies using set association analysis. BMC Genetics 2003, 4(Suppl 1):S9 |
|
41. |
Zhang K, Sun FZ, Waterman MS and Chen T (2003) Dynamic programming algorithms for partitioning sequence variation in human chromosomes. HERMIS, 4:15-26. Also “Computer Mathematics and Its Applications; Advances and Developments (1994-2005)” E.A. Lipitakis, Editor, LEA Publishers (2006), 431-442 |
|
40. |
Kim SK, Zhang K, Sun FZ (2004) A comparison of different strategies for computing confidence intervals of the linkage disequilibrium measure D'. Pacific Symposium on Biocomputing 2004:128-139 |
|
39. |
Sun, FZ, Cui, J, Gavras, H, Schwartz, F (2003) A novel class of tests for the detection of mitochondrial DNAmutation involvement in diseases. Am J Hum Genet 72:1515-1526 |
|
38. |
Zhang K, Chen T, Waterman MS, Sun FZ (2003) A set of dynamic algorithms for haplotype block partition and tag SNP selection via haplotype data and genotype data. Proceedings of DIMACS workshop on SNP |
|
32. |
Zhang K, Calabrese P, Nordborg M, and Sun FZ (2002) Haplotype block structure and its applications to association studies: power and study designs. Am J Hum Genet 71 1386-1394 |
|
31. |
Zhang K, Deng MH, Chen T, Waterman MS, Sun FZ (2002) A dynamic programming algorithm for haplotype block partitioning (PROGRAM) Proc Natl Acad Sci USA 99 7335-7339 |
|
30. |
Deng MH, Zhang K, Mehta S,
Chen T, Sun FZ (2002) Prediction
of protein function using protein-protein interaction data (supplement).
The first IEEE Computer Society bioinformatics conference, CSB2002, 117-126.
Also on Journal of Computational Biology, 10:947-960 |
|
29. |
Deng MH, Mehta S, Sun FZ,
Chen T (2002) Inferring
domain-domain interactions from protein-protein interactions (supplement). RECOMB2002:117-126.
Also on Genome Research 12:1540-1548. |
|
28. |
Zhang SL, Zhang K, Li JM, Sun FZ, Zhao HY (2001) Test of linkage and association for quantitative traits in general pedigrees: the quantitative pedigree disequilibrium test. Genet Epidemiol 21 S370-S375 |
|
27 |
Li JM, D Wang, JP Dong, RF Jiang, K Zhang, SL Zhang, HY Zhao, FZ Sun (2001) The power of transmission disequilibrium tests for quantitative traits. Genet Epidemiol 21 S632-S637 |
|
26. |
Jiang R, Dong J, Wang D, Sun FZ (2001) Fine-scale mapping using Hardy-Weinberg Disequilibrium. Ann Hum Genet, 65 207-219 |
|
25. |
Flanders WD, Sun FZ, Yang QH (2001) A new estimator of the genotype risk ratio for use in case parental-control studies. Am J Epidemol 154 259-263 |
|
24. |
Sun FZ (2001) Stochastic modeling of polymerase chain reaction
and related biotechnologies, Bulletin
of the International Statistical Institute, 53rd session
proceedings, book 1: 393-396 |
|
23. |
Sun FZ, Yang QH, Zhao HY, Flanders WD (2000) Transmission/disequilibrium tests for quantitative traits. Ann Hum Genet, 64 555-565 |
|
22. |
Zhao HY, Zhang SL, Merikangas KR, Widenauer DB, Sun FZ, Kidd KK. (2000) Transmission/disequilibrium tests using multiple tightly linked markers. Am J Hum Genet, 67 936-946 |
|
21. |
Yang QH, Khoury MJ, Coughlin SS, Sun FZ, Flanders WD (2000) On the use of population-based registries in the clinical validation of genetic testing for disease susceptibility. Genetics in Medicine, 2 186-192 |
|
20. |
Wang D, Zhao C, Cheng R,
Sun FZ (2000) Estimating
the mutation rate during error-prone polymerase chain reaction. J
Comp Biol, 7 143-158 |
|
19. |
Wang D, Sun FZ (2000) Sample sizes for the transmission/disequilibrium tests: The TDT, S-TDT and 1-TDT. Commun Stat-Theory M, 29 1129-1142 |
|
18. |
Sun FZ, Cheng R, Flanders WD, Yang QH, Khoury MJ (1999) Whole genome association studies for genes affecting alcohol dependence. Genet Epidemiol, 17 S337-342 |
|
17. |
Yang QH, Khoury MJ, Atkinson M, Sun FZ, Cheng R, Flanders WD (1999), Using case-control designs for genome wide screening for associations between genetic markers and disease susceptibility loci. Genet Epidemiol, 17 S779-784 |
|
16. |
Sun FZ (1999) Biological and statistical studies for
diseases involving mtDNA mutations. In: Halloran ME, Geisser S (eds) Statistics
in Genetics, 133-146. Springer, |
|
15. |
Yang QH, Khoury MJ, Atkinson M, Sun FZ, Flanders WD (1999) Case-only design to measure gene-gene interactions. Epidemiology, 10 167-170 |
|
14. |
Sun FZ, Flanders WD, Yang QH, Khoury MJ (1999) Transmission disequilibrium test (TDT) when only one parent is available: The 1-TDT. Am J Epidemol, 150 97-104 |
|
13. |
Sun, FZ (1999) Modeling
DNA shuffling. J Comp Biol, 6 77-90 |
|
12. |
Sun FZ, Flanders WD, Yang QH, Khoury MJ (1998) A new method for estimating the risk ratio in studies using case-parental control design. Am J Epidemol, 148 902-909 |
|
11. |
Sun FZ, Ashley AE, Durham LK, Feingold E, Halloran ME, Manatunga AK, Sherman SL (1998) Testing for contributions of mitochondrial DNA mutations to complex diseases. Genet Epidemiol, 15 451-469 |
|
10. |
Bruno W, Sun FZ, |
|
9. |
Savage-Austin A, Sun FZ, |
|
8. |
Yang QH, Atkinson M, Sun FZ, Sherman SL, Khoury MJ (1997) The method of sib-pair linkage analysis in the context of case-control design. Genet Epidemiol, 14 939-944 |
|
7. |
Brown MD, Sun FZ, Wallace DC (1997) Clustering of Leber hereditary optic neuropathy patients on a Caucasian mitochondrial lineage. Am J Hum Genet, 60 381-387 |
|
6. |
Sun FZ, Benson G, Arnheim N, Waterman MS (1997) Pooling strategies for establishing physical genome maps using FISH. J Comp Biol, 4 467-486 |
|
5. |
Sun FZ, Waterman MS (1997) Whole genome amplification and branching processes, Adv Appl Prob, 29 629-684 |
|
4. |
Sun FZ, Galas D, Waterman MS (1996) A mathematical analysis of in vitro selection amplification. J Mol Biol, 258 650-660 |
|
3. |
Sun FZ, Arnheim N, Waterman MS (1995) Whole genome amplification of single cells: mathematical analysis of PEP and tagged PCR. Nucleic Acids Research, 23 3034-3040. |
|
2. |
Port E, Sun FZ, Martin D, Waterman MS (1995) Genomic mapping by end characterized random clones: A mathematical analysis. Genomics, 26 84-100 |
|
1. |
Sun FZ (1995) The polymerase chain reaction and branching processes. J Comp Biol, 23 3034-3040. |
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