Ph.D. Thesis

  J. Hu. Sustainable Evolutionary Algorithms and Scalable Evolutionary Synthesis of Dynamic Systems. PhD thesis, Department of Computer Science and Engineering, Michigan State University, East Lansing, Michigan, 48823, USA, 2004 Click to download PDF File
Advisor: Erik Goodman

Journal Publications

14 J. Hu, Haifeng Li, Michael S Waterman, and Xianghong Jasmine Zhou. Integrative missing value estimation for microarray data. BMC Bioinformatics. 7: 449., 2006. Click to download PDF File
13 J. Hu, Yifeng David Yang and Daisuke Kihara, "EMD: an Ensemble Algorithm for discovering regulatory motifs in DNA sequences", BMC Bioinformatics, 7:342. 2006. Click to download PDF File
12 J. Hu, Bin Li, and Daisuke Kihara, "Limitations and Potentials of Current Motif Discovery Algorithms", Nucleic Acid Research, 33: 4899-4913, 2005Click to download PDF File
11 Fei Pan, Kiran Kamath, Kangyu Zhang, Sudip Pulapura, Avinash Achar, Juan Nunez-Iglesias, Yu Huang, Xifeng Yan, Jiawei Han, Haiyan Hu, Min Xu, J. Hu, Xianghong Jasmine Zhou. K. Kamath et. al. Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data. Bioinformatics, 22: 1665-1667, 2006. Click to download PDF File
10 S. Li, X. Chen and J. Hu. Study on Sustainable Evolutionary Algorithm Based on Hierarchical Search. China Mechanical Engineering (Chinese), 7(11), 2006.
9 J. Hu, E. D. Goodman, and R. C. Rosenberg, " Automated Synthesis of Mechanical Vibration Absorbers Using Genetic Programming", Computer-Aided Design , Special Issue on human-competitive evolutionary design, 2005 (accepted)
8 J. Hu, E. Goodman, K.Seo, Z. Fan, R. Rosenberg, "The Hierarchical Fair Competition (HFC) Framework for Sustainable Evolutionary Algorithms", Evolutionary Computation, 13 (2), MIT Press, 2005. Click to download PDF File
7 J. Hu, E. Goodman, R. Rosenberg, "Topologically Open-Ended Synthesis of Dynamic Systems with High Robustness Using Genetic Programming: a Case Study of Analog Filter Synthesis", IEEE Transaction on Evolutionary Computation, IEEE Press, 2005. (accepted)
6 Z. Fan, K. Seo, J. Hu, E. Goodman, R. Rosenberg, "A Novel Evolutionary Engineering Design Approach for Mixed-Domain Systems," Journal of Engineering Optimization, Volume 36, Number 2, 2004. Click to download PDF File
5 K. Seo, Z. Fan, J. Hu, E. D. Goodman, and R. C. Rosenberg, "Toward an Automated Design Method for Multi-Domain Dynamic Systems Using Bond Graphs and Genetic Programming," Mechatronics , 13, (8-9), pp. 851-885, 2003.Click to download PDF File
4 K. Seo, J. Hu, Z. Fan, E. D. Goodman, and R. C. Rosenberg. Automated Design Approaches for Multi-Domain Dynamic Systems Using Bond Graphs and Genetic Programming," The International Journal of Computers, Systems and Signals, vol.3, no.1, pp.55-70, 2002. Click to download PDF File
3 S. Li, J. Hu, Q. Xie and H. Zhang. Automated Design of Mechtronic Systems based on Genetic Programming and Bond Graphs. Journal of System Simulation (Chinese), 14 (11): 1513-1516, 2002
2 J. Hu, Shuchun Wang, "An Overview of Computational Intelligence Solutions to Intelligent Manufacturing Problems", Journal of China Mechanical Engineering (Chinese). No.1., 1999.
1 J. Hu, Zhongfu. Zhang, "Weight Inducement and Hierarchical Training Algorithm of BP Neural Network", Journal of Computer Science (Chinese), No. 1, 1998.

Book Chapters

6 J. Hu, Z. Fan, J. Wang, X. Peng, K. Seo, J. Terpenny, and E. Goodman. GPBG: A Framework for Evolutionary Synthesis of Multi-domain Engineering Systems. Eds. Kalyanmoy Deb, (accepted), 2006
5 J. Hu, S. Li and E. Goodman. Evolutionary Robust Design of Analog Filters using Genetic Programming. In Evolutionary Computation in Dynamic and Uncertain Environments, Springer Series on Studies in Computational Intelligence. 2006. (in press)
4 J. Hu, E. Goodman, “Domain Specificity of Genetic Programming based Automated Synthesis: a Case Study with Synthesis of Mechanical Vibration Absorbers”, in Genetic Programming Theory and Practice. Rick Riolo and Bill Worzel (eds.). Kluwer Publishers, Boston, MA. 2005.
3 J. Hu, E. Goodman. Evolving robust dynamic systems with genetic programming. In Genetic Programming Theory and Practice. Rick Riolo and Bill Worzel (eds.). Kluwer Publishers, Boston, MA. 2004.
2 J. Hu, K. Seo, E. Goodman, R. Rosenberg. Toward efficient topological synthesis of dynamic systems using bond graphs and genetic programming. Nadia Nedjah. (eds). Evolutionary Machine Design: Methodology and Applications. Nova Science Publishers, NY, USA, 2004.
1 J. Hu, E. Goodman and K. Seo. Continuous Hierarchical Fair Competition Model for Sustainable Innovation in Genetic programming. In Genetic Programming Theory and Practice. Rick Riolo and Bill Worzel (eds.). Kluwer Publishers, Boston, MA. 2003.

Conference Publications

12 J. Hu, X. Zhong, E. Goodman, “Open-ended Robust Design of Analog filters Using Genetic Programming”, Proc. Genetic and Evolutionary Computation Conference. (Best paper nominee), 2005 Click to download PDF File
11 J. Hu, E. Goodman, “Robust and Efficient Genetic Algorithms with Hierarchical Niching and Sustainable Evolutionary Computation Model”, Proc.Genetic and Evolutionary Computation Conference.2004 Click to download PDF File
10 J. Hu, E. Goodman, “Wireless Access Point Configuration by Genetic Programming”, Proc. IEEE Congress on Evolutionary Computation (CEC) 2004. Click to download PDF File
9 J. Hu, E. Goodman, and R. Rosenberg, “Topological search in automated mechatronic system synthesis using bond graphs and genetic programming”, Proc. of American Control Conference (ACC), 2004. Click to download PDF File
8 J. Hu, K. Seo, Z. Fan, R. Rosenberg, and E. Goodman, " HEMO: A Sustainable Multi-Objective Evolutionary Optimization Framework", Proc. 2003 Genetic and Evolutionary Computation Conference, Chicago, Springer, Lecture Notes in Computer Science, July, pp. 1029-1040, 2003 Click to download PDF File
7 Z. Fan, K. Seo, J. Hu, R. Rosenberg, and E. Goodman, " System-Level Synthesis of MEMS via Genetic Programming and Bond Graphs", Proc. 2003 Genetic and Evolutionary Computation Conference, Chicago, Springer, Lecture Notes in Computer Science, July, pp. 2058-2071, 2003. Click to download PDF File
6 K. Seo, Z. Fan, J. Hu, E. Goodman, and R. Rosenberg, "Dense and Switched Modular Primitives for Bond Graph Model Design," Proc. 2003 Genetic and Evolutionary Computation Conference, Chicago, Springer, Lecture Notes in Computer Science, July, pp. 1764-1775., 2003 Click to download PDF File
5 J. Hu, E. D. Goodman, K. Seo, M. Pei, "Adaptive Hierarchical Fair Competition (AHFC) Model for Parallel Evolutionary Algorithms," Proceedings of the Genetic and Evolutionary Computation Conference, GECCO-2002, New York, July, pp. 772-779., 2002. Click to download PDF File
4 J. Hu, K. Seo, S. Li, Z. Fan, R. C. Rosenberg, E. D. Goodman, "Structure Fitness Sharing (SFS) for Evolutionary Design by Genetic Programming," Proceedings of the Genetic and Evolutionary Computation Conference, GECCO-2002, New York, pp. 780-787. , 2002. Click to download PDF File
3 Z. Fan, K. Seo, R. C. Rosenberg, J. Hu, E. D. Goodman, "Exploring Multiple Design Topologies using Genetic Programming and Bond Graphs", Proceedings of the Genetic and Evolutionary Computation Conference, GECCO-2002, New York, July, pp. 1073-1080, 2002 Click to download PDF File
2 J. Hu, E. D. Goodman, "Hierarchical Fair Competition Model for Parallel Evolutionary Algorithms," Proceedings, Congress on Evolutionary Computation, CEC 2002, IEEE World Congress on Computational Intelligence, Honolulu, Hawaii, May, 2002.Click to download PDF File
1 Z. Fan, J. Hu, K. Seo, E. D. Goodman, R. C. Rosenberg, and B. Zhang, "Bond Graph Representation and GP for Automated Analog Filter Design," 2001 Genetic and Evolutionary Computation Conference Late-Breaking Papers, E. Goodman, ed., ISGEC Press, San Francisco, pp. 81-86., 2001. Click to download PDF File

Workshop Contributions

4 J. Hu, E. D. Goodman, K. Seo, Z. Fan, R. C. Rosenberg, "HFC: A Continuing EA Framework for Scalable Evolutionary Synthesis", Proceedings of the 2003 AAAI Spring Symposium - Computational Synthesis: From Basic Building Blocks to High Level Functionality, Stanford, California, March, 24-26, pp. 106-113, 2003
3 Z. Fan, K. Seo, R. C. Rosenberg, J. Hu, E. D. Goodman, "Computational Synthesis of Multi-Domain Systems", Proceedings of the 2003 AAAI Spring Symposium - Computational Synthesis: From Basic Building Blocks to High Level Functionality, Stanford, California, March, 24-26, pp. 59-66, 2003
2 E. D. Goodman, K. Seo, Z. Fan, J. Hu, R. C. Rosenberg, "Automated Design of Mechatronic Systems: Novel Search Methods and Modular Primitives to Enable Real-World Applications," 2003 NSF Design, Service and Manufacturing Grantees and Research Conference, January 6-9, Birmingham, Alabama, 2003
1 E. D. Goodman, K. Seo, R. C. Rosenberg, Z. Fan, J. Hu, and B. Zhang, "Automated Design Methodology for Mechatronic Systems Using Bond Graphs and Genetic Programming," 2002 NSF Design, Service and Manufacturing Grantees and Research Conference, January 7-10, San Juan, Puerto Rico, 2002