Reconstruction and Accuracy Assessment of Diploid Consensus Sequences from shotgun Sequencing
The work is reported in the following publications.
Kim,JH, Waterman, MS, Li, LM. (2007) Diploid genome reconstruction of Ciona intestinalis andcomparative analysis with Ciona savignyi, Genome Research, 17: 1101-1110.
Kim
,JH, Waterman, MS, Li, LM. (2006) Accuracy Assessment of Diploid Consensus Sequences, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 4:88-97.Li, LM, Kim, JH, Waterman, MS. (2004). Haplotype reconstruction from SNP alignment. Journal of Computational Biology, 11:505-516.
Assembly of Ciona intestinalis
Consensus of Ciona intestinalis